Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs11604212 chr11:20024894 G/T 2.69E-6 118 42.25 29.9 13.75 KM Plot
THYM rs11604681 chr11:20031042 G/A 4.03E-6 118 42.73 32.7 13.75 KM Plot
THYM rs11605275 chr11:20031865 C/T 3.55E-6 118 42.82 29.9 13.75 KM Plot
THYM rs116056674 chr4:70167205 C/A 7.68E-13 117 40.67 35 6 KM Plot
THYM rs11605704 chr11:20032096 A/G 4.19E-6 119 13.75 34.55 42.73 KM Plot
THYM rs11606785 chr11:20030430 A/C 2.75E-6 119 42.73 32.7 25.83 KM Plot
THYM rs11614438 chr12:130644155 G/A 1.93E-8 115 44.3 32.58 12.63 KM Plot
THYM rs116156133 chr2:10952648 C/T 0.000197 119 41.77 38.58 62.72 KM Plot
THYM rs11628049 chr14:78308451 C/T 0.000164 119 38.33 48.33 24.17 KM Plot
THYM rs11633272 chr15:93973887 C/T 2.56E-13 119 6 45.92 38.9 KM Plot
THYM rs11639856 chr16:24788645 A/T 3.44E-6 119 31.37 28.43 49.73 KM Plot
THYM rs11641603 chr16:24793432 C/T 3.09E-6 119 46.27 29.23 31.37 KM Plot
THYM rs11642954 chr16:24824248 G/A 3.92E-6 118 46.6 30.03 31.37 KM Plot
THYM rs116469503 chr5:67016273 C/A 4.41E-8 118 45.87 37.13 12.93 KM Plot
THYM rs11647120 chr16:24819806 A/G 3.44E-6 119 49.73 28.43 31.37 KM Plot